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MMC Git Repository Commit History
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commit 870aa2b8cc2048f7a7bd41a23730d39082b1b598
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Jan 1 00:07:07 2016 -0500
update ChangeLog, release v2016.1
commit 9d80f1ff5ebae2845e9cd63d7a974445dbc1bd41
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Dec 31 23:36:08 2015 -0500
label 1.0-beta as v2016.1
commit 239d8fefb3fb11377896d573cc8c25fb0f6aca32
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Dec 31 19:30:52 2015 -0500
add mcx_validatecfg, adjust feedback format in the interactive mode
commit 1419f954973f02c63d0bb78bb78f638a48317a63
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Dec 31 19:29:20 2015 -0500
enclose mmc error with a critical section
commit a34f2cbf3c1df73001bba7630bdfe1b37bfee319
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Dec 31 19:21:29 2015 -0500
fix crashed caused by inaccurate raytracing in Havel Raytracer
commit e027792ea44ffe8aab506feacbedf14a49a75d6e
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Dec 25 23:44:51 2015 -0500
mmclab selftest script to test incomplete inputs
commit 2a8d9828083c5d9286969c0eeb383adfd94ccfa5
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Dec 25 01:00:07 2015 -0500
replace drand48_r by erand48 for POSIX compliance; fix mmclab remesh bug; unify seeds; input error stress test
commit 734792955d4dc3740b571cec66afad4af0554326
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Dec 24 10:41:40 2015 -0500
rename main unit to mmc.c; use sse by default for mmclab; change rng seed
commit e12e0d1f36e5cac55b2c77d385732c41fb115bcf
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Dec 24 00:20:18 2015 -0500
automatic download digimoouse mesh when missing
commit fc969d2e6fb60981bcc66213de1d895d41041222
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Dec 23 17:55:39 2015 -0500
test replay demo script; simplify isotropic src; use sse as default target; mmclab error handling
commit 5559b9fe87e62d45ee380f46b28ae1993a745d68
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sun Dec 20 16:06:22 2015 -0500
update cJSON to svn version
commit bf671d4ec07ed792a939c0976e9227808bad13ce
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Dec 18 17:10:16 2015 -0500
upload the missing input file
commit e34d16f34e18517c82d0161d5f322f89a9c4d4ad
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Dec 18 12:30:40 2015 -0500
update documentation for 1.0-beta release
commit 787625be0770885209d325a6d889d11491183706
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Dec 18 11:29:13 2015 -0500
use last commit date from git log
commit f58518328885b6d7727c35a12798892f337ea6a0
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Dec 17 19:00:14 2015 -0500
use filters to automatically update keywords
commit 91fa7f71afb4b756446d60096ef9317b9499d3ff
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Dec 16 18:34:58 2015 -0500
add SDFI examples for both binary and mmclab
commit dc17ebc55a29c17a5740ca3c8529b2a3f1c14b27
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Nov 10 14:11:39 2015 -0500
use Kahan sum for total weight accummulation, otherwise counter stops at 16777216
commit 29e2816249cc7902ef7ffc5c5d87eb1206ef9b49
Author: Qianqian Fang <fangqq@gmail.com>
Date: Mon Oct 19 16:49:30 2015 -0400
fix voidtime flag, fix mesh entry and exit with retessellated meshes
commit ccdeb40785e70662e389510f510e5084b083049a
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sun Sep 13 13:09:27 2015 -0400
support converging and diverging wide-field beams by specifying the focus
commit 435b3f71c91ed87c09e7754129d39e6716538a98
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sat Sep 12 11:08:10 2015 -0400
plot the contour of the inclusion
commit 3726b77ad3a22a2c138be256f46885aa19ad2825
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Sep 11 00:32:51 2015 -0400
updated mcx and mmc comparison demo script
commit e2c8e08f6abd28013c13fc69ed3f242afc85c51a
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sat Aug 8 17:37:21 2015 -0400
prevent waitbar window flickering
commit 5a5b680058593f832189d4a5374be853989ae212
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Aug 6 20:17:09 2015 -0400
comparing mcx and mmc for object with inclusion, something is wrong when depositing energy
commit 9b491ebc948e9bc2438c2c5860a20abcc710b0cc
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Aug 6 15:56:44 2015 -0400
remove redundant flags in mmclab
commit 6b06961c85cb40a2dfa6b5e78dbf43fd699ee599
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Aug 6 15:53:45 2015 -0400
add voidtime flag in mmclab
commit abe5a78356ede1a93b6e8aeb7e95a83db7f740a9
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 5 16:15:34 2015 -0400
automatically retessellate mesh when widefield src is used
commit eb9c0b27170bdedc5ba526d6023905c0a2a9295d
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 5 13:34:35 2015 -0400
add demo script to compare mcx and mmc for simple and complex sources
commit 70c3151e5ee3afea0eab59827063897058cd8284
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 5 13:26:04 2015 -0400
fix normalization bug, fix absorption ratio printing bug
commit a973dae0de1aed8f2498304cace2281140eb11b2
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 5 12:30:53 2015 -0400
add widefield source support in mmclab
commit 5876a05bd409bd7c535d9636bb9e6dfddfcfb8b7
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sat Jul 18 00:04:26 2015 -0400
normalize dir vector after reflection or transmission
commit ed61cacb47de80200faf334020a51d52d827a46b
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Jul 17 09:24:59 2015 -0400
use proper epsilon for float roundoff tests
commit f09621609b4bbe2867cdc7c151ca38621f04bb95
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Jul 16 12:47:30 2015 -0400
partial update for mmclab.cpp, it does not have widefield support yet
commit 2f93471cafb816eb112f797c9cd871ebbed83019
Merge: c4ba3c6 08da9f9
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Apr 29 05:31:25 2015 -0400
Merge branch 'master' of git://git.code.sf.net/p/mcx/git into widefield
commit c4ba3c69886c383f5e9fa3e5a31d73acb256825c
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Apr 28 23:14:56 2015 -0400
apply the same trick to prevent rounding off error in index calculations
commit 4c4a6f193d73b274a583f790bbe8d4ac6b8ac10f
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Apr 24 01:15:26 2015 -0400
prevent writing beyond weight array boundary when photontimer is very close to tend
commit 1e55518fe7204f034bb6fd59c6025124f16033e2
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Apr 22 14:40:23 2015 -0400
updated addsource script for the planar example
commit af39ce71022daf2b4f93e9ebbd8844918ed7aed9
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Apr 21 19:33:06 2015 -0400
counting overhead in all ray-tracers
commit 3a6b0650018a6cdf5d2572a72b4b94b9e837c896
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Apr 21 19:31:02 2015 -0400
add support to widefield/distributed detectors
commit a3e588a7d261107159368131ce1a99dab7f356d8
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Apr 21 13:51:48 2015 -0400
add -k or --voidtime option to control the timer in the external space
commit 06c034791cfa14b905103c1cf6d92678b26e40e4
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Apr 21 13:20:16 2015 -0400
mmc widefield detector should keep exact shape
commit 6f33d8e10891b4388b7f415dc6df98d46419398e
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Apr 21 11:51:36 2015 -0400
mmcadddet to add widefield detectors, off-load orthdisk to iso2mesh
commit 75324bd9fbb7650b63cb1cd946d275ec0fa8995c
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Apr 21 11:02:19 2015 -0400
apply expansion to fourier and planar sources
commit b7295ecb590b8c813bff92b0c10d40893fda5df8
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sat Apr 18 13:31:35 2015 -0400
a generalized mmcaddsrc to handel various source types
commit 08da9f9cf72ce42b2b9bfe0fd6fbccf84b93a099
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Apr 15 13:39:25 2015 -0400
allow JSON input to have only one detector
commit f65a4621dd2e8df883445bc69953e22ba3ee8d8b
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Apr 15 00:08:09 2015 -0400
add counter to estimate widefield source overhead
commit cb321056bb725279a74045120025219ac79b152e
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sat Apr 11 09:43:58 2015 -0400
allow specifying endianness when loading mch files
commit 1ea2ee0f7de08f7397b3bcba325e3a76c90e694d
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sat Apr 11 08:36:43 2015 -0400
fix the hardcoded endianness flag
commit 4b3eba65f6cca20ea8c0041dd7f07a7317921f8b
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sat Apr 11 08:31:18 2015 -0400
allow specifying endianness when loading mch files
commit a7d64fff51edd1a503da617eeb3f7722f0b87396
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Apr 10 00:19:29 2015 -0400
add the missing -x option in the help
commit 531ad2e4b0f8917e8638cdba990b8b97c731d009
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Apr 10 00:17:44 2015 -0400
Revert "add the missing -x option in the help"
This reverts commit f0f6c36e1b522fb27b7b9ff532e1b0df99c47a25.
commit f0f6c36e1b522fb27b7b9ff532e1b0df99c47a25
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Apr 10 00:14:58 2015 -0400
add the missing -x option in the help
commit b3484d25a9050d79837610ac44390ab7fb735bec
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Apr 9 23:25:31 2015 -0400
avoid crash from writing to a string literal
commit 1d9883a819615a2b26f7194bd2ce23d4abf5d61e
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Apr 9 23:16:33 2015 -0400
allow reseeding from the input file
commit 116d5b257e0489fdf10364d772d711d587aa26c0
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Apr 8 23:47:16 2015 -0400
add mmcaddsrc function, add spherical planar source example
commit ddc69b4ec512e69bcff5ad0ae79ca3147e5528e4
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Apr 7 23:04:14 2015 -0400
remove 0-elements from the nodal volume calculation - an issue identified by Ruoyang
commit ad05167c88705bafbb627fc65e4d1b833833e8ca
Author: Qianqian Fang <fangqq@gmail.com>
Date: Mon Mar 30 22:46:42 2015 -0400
fix bug to calculate scattering len at launch time
commit 61a85270a8431d45025dc4b751e1604f48e6ea9e
Author: Qianqian Fang <fangqq@gmail.com>
Date: Mon Mar 16 15:15:26 2015 -0400
add debugging output for photons first enter and exit a non-zero element
commit c8d529e72b05f097a001457fed816ea31b64721d
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Mar 12 15:20:55 2015 -0400
prevent crashing in newer matlab where waitbar is not supported in nojvm mode
commit b4358b6ad3c03ab23bc70a0ba51eb9aae3b27b84
Author: Qianqian Fang <fangqq@gmail.com>
Date: Mon Feb 23 17:27:06 2015 -0500
temporarily disable specular reflection for wide-field sources
commit eb937d8f15022db2f179ed2169bea4f9cba9c173
Author: Ruoyang Yao <yaoruoyang@gmail.com>
Date: Wed Feb 11 15:02:40 2015 -0500
correct normalization process, add widefield planar example
commit a1920c2db4df537a3ffbe5d71b2b2be019eeca19
Author: Ruoyang Yao <yaoruoyang@gmail.com>
Date: Tue Feb 10 15:31:56 2015 -0500
fix mch file under issaveexit option, change normalization with accumulated weight
commit d2ed851cf8ef1d3f234b5697aacb01e13ca24e88
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sun Feb 8 00:21:48 2015 -0500
if pencil beam, use the old faster source handeling, fix srcelem bug, add detelem
commit be68287d84b118ce0e031cc24f8c844c9405d53c
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sat Feb 7 22:43:29 2015 -0500
remove mcx_const.h, use TSrcType, compatible with 4-src-parameter input
commit 7dc415dba0b7d901b431d2a8cc244eadb48ea581
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Feb 6 18:11:13 2015 -0500
code clean up, restore previous versions if no significant changes were made
commit 4f8936d6f8b6678f25ec1f5bb04a47cba2ee67a4
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Feb 6 16:43:57 2015 -0500
apply Ruoyang Feb04 patch for saving photon initial weight in mch
commit 44864bf7aed6190ab72c0490d223b5697be08e51
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Feb 6 16:04:59 2015 -0500
apply Ruoyang Feb03 cumulative patch for widefield mmc with remeshing
commit a99ac28e5c27c863c78b7e4d77431a38159cf40f
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Jun 5 18:07:06 2014 -0400
add colin27 atlas example to reproduce Fig 4
commit 8a4ff9de63246cb9d180a89c1be35d72ae9c4115
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Jun 5 16:17:34 2014 -0400
mmclab sse version fail to replay, unlink for now
commit 6efbfc455a9bdb37e4221f8471b1f6783541cf85
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sun Jan 5 17:35:32 2014 -0500
update changelog
commit 8f6527b868865050d182b8d59d57e0af20a8541b
Merge: a9959a9 73f59af
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sun Jan 5 16:19:18 2014 -0500
Merge branch 'master' of ssh://git.code.sf.net/p/mcx/git
commit a9959a9c6d269267429a08446ce5db15c3615f7d
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sun Jan 5 16:18:58 2014 -0500
webmmc skeleton
commit 73f59af50c7f339991caece37981455b13d33ef4
Author: Qianqian Fang <fangq@nmr.mgh.harvard.edu>
Date: Thu Dec 5 15:32:04 2013 -0500
fix elem type index offset
commit 2a5e01e2f0bc970535310e37fcc544ea261ce32a
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Oct 22 09:21:49 2013 -0400
fixing isotropic scattering bug at g=0
commit e39bf355840b8d9c665df22483d1f6a6474632f8
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 28 16:07:52 2013 -0400
update svn to git
commit bbf53f3ab945b4df8a22970b0062de5bc6a7e456
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Jul 12 14:32:10 2013 -0400
disable Russian Roulette in Jacobian output, scale partial path by unitinmm
commit 1af71a851850d7a840355967d17c05c82925337e
Author: Qianqian Fang <fangqq@gmail.com>
Date: Tue Jul 9 16:05:45 2013 -0400
fix loadseedfile bug and replaydet=0 to replay all
commit 34e39278cac2eb81aa49824e5a6e01e8062e38a6
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Jul 5 23:51:31 2013 -0400
building Jacobian in the replay mode
commit e8d59c6e07a0a6348fdf7907da94b64ec9a23285
Merge: d8c804d b0fa4b8
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Jun 26 13:11:29 2013 -0400
Merge branch 'master' of ssh://git.code.sf.net/p/mcx/git
commit d8c804de1751d04a262d53481bfc5cbcd534c656
Merge: cabc3c2 9d32dbc
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Jun 26 13:10:50 2013 -0400
fix tshift round off error
commit b0fa4b8e389f587bb3a467b626df470fdaa17c7d
Author: Qianqian Fang <fangq@pangu.(none)>
Date: Mon Jun 24 15:15:40 2013 -0400
output mua Jacobian in the replay mode
commit cabc3c25bc631799202776d670e6c99612456c82
Author: Qianqian Fang <fangqq@gmail.com>
Date: Mon Jun 24 15:03:41 2013 -0400
output mua Jacobian in the replay mode
commit 9d32dbccf9e362c4cf06665b51cf6a505ca24a70
Author: Qianqian Fang <fangq@pangu.(none)>
Date: Sun Jun 23 12:32:15 2013 -0400
add code for mua Jacobian in replay, not tested
commit 5d6b23b3cfc473076232c3940adfdeb1a4237f54
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Jun 20 18:55:36 2013 -0400
replay particular detector
commit 86df1f4a03b322c33730c4a762297e83b8f4032a
Author: Qianqian Fang <fangq@nmr.mgh.harvard.edu>
Date: Sun Mar 3 12:13:28 2013 -0500
saving photon exit pos and direction, fix valgrind errors
commit 505c9e84ed9ec785076c1637250cc205ccec598e
Author: Qianqian Fang <fangq@nmr.mgh.harvard.edu>
Date: Sat Mar 2 20:38:32 2013 -0500
replay mode is complete: load seeds from a previous simulation
commit fb5ae8f0d53fdd3ab767014b69697c190596229d
Author: Qianqian Fang <fangq@nmr.mgh.harvard.edu>
Date: Sun Feb 24 13:32:05 2013 -0500
save RNG seeds for all detected photons, enable perturbation MC
commit 36fa9b3592dadbdbb16d2af467642672cf86240a
Author: Qianqian Fang <fangqq@gmail.com>
Date: Mon Aug 20 01:44:19 2012 -0400
update compiling instructions
commit 04583ee07d2f64ae7a7f0aa054f0cefeb2068e35
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sat Aug 18 18:37:26 2012 -0400
changes to compile mmclab on windows
commit 8d6a02f279a92a67cf5085cfc24f3de2ebd06842
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Aug 17 13:49:54 2012 -0400
add MMCLAB examples
commit c64dd9660ab1c82e6006e0dc237117953c5cfb24
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Aug 16 23:07:30 2012 -0400
initial ray-tracing if source is not inside the mesh
commit edd34a54b7ff7b9e5c69dd261a5226424a3d9628
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 15 12:09:05 2012 -0400
makefile tested on a mac
commit 2a634371d8c884f2543ddab29c4bae0a971a1754
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 15 11:11:10 2012 -0400
compiled on windows and linux
commit 05581060764439767ccfe85fe3d5d3db5fd057fd
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Aug 3 17:22:51 2012 -0400
returning partial pathlength is tested in mmclab
commit 7b77ad3142f55528e3394723a2108c1580168adc
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Aug 3 17:22:22 2012 -0400
allow detector individual radius
commit efe902dba4efe890f896e15b4cfaa55a228b19d7
Author: Qianqian Fang <fangqq@gmail.com>
Date: Fri Aug 3 09:51:05 2012 -0400
fix sse crash for mmclab
commit 54b4f8d994e32d265c27c91dd9bcc2bb59c5fd19
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Aug 2 14:47:18 2012 -0400
prevent octave from buffering output
commit 26318ebf47c8fd5188ba30fae5fe9db0683af4ee
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Aug 2 14:08:07 2012 -0400
fix octave waitbar crash
commit b620affbf4ab6421741a37bf39921524f6426bc7
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Aug 2 13:40:50 2012 -0400
fix crash, thanks to valgrind
commit 473ddfbc45b949211129c5c125fa28c9067f541d
Merge: 66165d9 23ce5e2
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Aug 2 11:08:34 2012 -0400
Merge branch 'master' of ssh://mcx.git.sourceforge.net/gitroot/mcx/mcx
commit 23ce5e2f8e6dbea664e54b84c38734017f17ac12
Author: Qianqian Fang <fangq@nmr.mgh.harvard.edu>
Date: Thu Aug 2 11:06:38 2012 -0400
fix warnings, compile mmclab for octave
commit 66165d9c0653f2490f7a94b4e19a6d9c7beb2cc8
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Aug 2 10:31:51 2012 -0400
fix warnings, fix oct compilation
commit dca8374b6498509ed801561ad4634a0b3868623a
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 1 23:40:04 2012 -0400
add plotting in the example
commit cd236552ceb5af77650d1c4d31168e557e1fe9b9
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 1 23:00:52 2012 -0400
code tuning for mmclab
commit 837a5d3827562b94241136ef42c2a715565fcfa7
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 1 19:35:35 2012 -0400
matlab progress bar support in mmclab
commit 679b7975e4956bcdd11d7c2825879c59d0e25de3
Author: Qianqian Fang <fangqq@gmail.com>
Date: Wed Aug 1 16:04:23 2012 -0400
compile and link with mex to use openmp
commit 9a9140ef596140177de618f96e7a897bfa49528f
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sun Jul 29 18:02:03 2012 -0400
exception handling in mmclab, improve documentation
commit f57492d67b9cffd91922dd02a5d6abdae79f0931
Author: Qianqian Fang <fangqq@gmail.com>
Date: Sun Jul 29 00:27:24 2012 -0400
add first draft of mmclab
commit 7dbbed3d40b10935be76895c9e00e674c59c7520
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Jul 19 16:02:12 2012 -0400
fix mesh name reference in the json input file
commit 4207276a3cab2d38a610a9d4eeb79308a2353ac3
Author: Qianqian Fang <fangqq@gmail.com>
Date: Thu Jul 19 14:54:32 2012 -0400
rename meshtest file names to be consistent with the paper benchmark names
commit 8daceca60926498aff7019760c29f8a0b4ee76ef
Author: Qianqian Fang <fangq@home>
Date: Sat Jul 14 16:14:01 2012 -0400
skeleton for webmmc
commit 2cdffb9a2f297cb8b4511593f785d0e478a5044f
Author: Qianqian Fang <fangq@nmr.mgh.harvard.edu>
Date: Thu Feb 2 18:46:26 2012 -0500
support binary output format with -F flag
commit 8750df3825c58db2d28a04beac6ca8aebecda5bb
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Wed Jan 25 14:02:20 2012 -0500
support isotropic source, reading source types from JSON input
commit 949a19d41531db2129870de0111a73b0f9f5976b
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Fri Jan 20 20:18:22 2012 -0500
loading json file fails on windows due to file open mode
commit 66b19b09d5266290b7f3e950a478369fe30c3efd
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Tue Dec 20 14:08:31 2011 -0500
fix README heading typo
commit e72b60d7eee8d160bb05cdae66e4987f91fd44e5
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Tue Dec 20 13:58:34 2011 -0500
fill random angles at the beginning, effects ssemath targets
commit 82e9471f329935880206063bdc9bf72f9863e467
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Mon Dec 19 23:46:41 2011 -0500
add dependent library copyright disclaimers
commit 0d137bc6b2a7849405448ad944ddc9e477d09592
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Mon Dec 19 23:08:03 2011 -0500
update doc for v0.9.0
commit 37b2079c670714c727053263892b44d11b80b2fc
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Mon Dec 19 17:09:35 2011 -0500
fix typo in sfmt_rand.c
commit ba84a082685c20fff4a62e0a88b76ef2154adc2e
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Mon Dec 19 16:03:09 2011 -0500
fix a critical bug in Havel raytracer, effects all SSE4 binaries
commit 6f4301ca9650b117f6007f813d9bcca8515a72f5
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Sat Dec 17 19:14:57 2011 -0500
add checkpoints for debugging, add statistical noise test
commit 37ea2009dda72224a583ee884e577f5b163bdf7b
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Sat Dec 17 00:58:54 2011 -0500
prevent racing for sfmt rng
commit 8f01286f1f2652bfe88ca9005a3e842167c2a9ba
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Thu Dec 15 15:25:14 2011 -0500
polishing before releasing version 0.9
commit df9fbafc7e716f0e7ec51ceecdcc96737cbb5a2c
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Wed Nov 2 10:40:51 2011 -0400
update mcx_error to print line and unit numbers
commit fd31645ac158a6a519496b6bd76362a7a62a3278
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Tue Nov 1 19:27:16 2011 -0400
avoid overwriting command line settings
commit cf07e20e83e6142023ffb25d7286ed1c89116888
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Tue Nov 1 19:03:41 2011 -0400
remove debug flag
commit 7e6eb997a9fa32c7bcf246a80bd5e55ce24713a7
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Tue Nov 1 18:38:28 2011 -0400
support JSON-formatted input file
commit f3d911a0d91d3f804d7c4bc4e6aed3d142ade371
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Wed Oct 19 15:29:17 2011 -0400
remove unneeded examples, update doc to add new DCS feature
commit fdff9ca0c5ef7c2cc52dffb0542f1212e52f25ac
Author: Stefan Carp <carp@thm.nmr.mgh.harvard.edu>
Date: Wed Oct 19 12:20:49 2011 -0400
Added DCS example, fixed generate_g1.m help, added helper function load_mc_prop.m
commit 4cf260b641a7f3befb99f91d64ada645dd91055e
Author: Stefan Carp <carp@thm.nmr.mgh.harvard.edu>
Date: Mon Oct 17 19:34:49 2011 -0400
Corrected normalization in generate_g1.m
commit 3d22c05610c743a1ed0ccb8119b9ccbf9f545065
Author: Stefan Carp <carp@thm.nmr.mgh.harvard.edu>
Date: Fri Oct 14 16:53:53 2011 -0400
add momentum transfer tracking and auto-correlation computation
commit 312c50e70df0bc981a59e9a3dfc0a12763342fc1
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Wed Oct 12 12:13:59 2011 -0400
fix a bug in writing mch file
commit 2b56c66d77871bfac84269aa6413cefee0894d92
Author: Qianqian Fang <fangq@kwafoo.nmr.mgh.harvard.edu>
Date: Tue Sep 20 14:51:47 2011 -0400
improve seed initialization from thread ids
commit c7ac839e2d6a64c59bcd08f54084c1b554af51fb
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Aug 24 23:50:19 2011 +0000
fix sfmt bug when initializing rng seed in multi-threads
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commit b7016cb50cc47c78f9c12e6e2656923f90d12d4e
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jun 17 16:12:18 2011 +0000
rename author.txt
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commit dcbca38b8a2f6d0b965902b37b2d306d6eb358b6
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jun 17 16:11:14 2011 +0000
update README
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commit 669afb352a358c4f57de442e2133ad43c898bc3a
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jun 17 13:29:05 2011 +0000
prevent linking error on windows
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commit 7558aac322f3e425000b1997b89216084b021690
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jun 17 12:59:31 2011 +0000
mac tweaks
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commit bf4f907639defe4fd6db2f0d59cc51af3c4a4487
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jun 17 12:56:32 2011 +0000
changes to compile on Mac OS
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commit fe621eb4c6383a2d1e5cc752564434f4f337d1af
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Jun 16 23:19:17 2011 +0000
updates for 0.8.0 release
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commit e68c2b8f680ce6a90995b3cbc0a158b995953745
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon May 2 18:53:54 2011 +0000
oops, wrong page number
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commit 62077ca8fb117593d58fdfa92062ba4d592188d0
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon May 2 17:32:44 2011 +0000
update changelog after merging to trunk
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commit 50d5ae56406cee3d53e3ef39cc2ae721c2f0e4fd
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat Apr 23 03:53:54 2011 +0000
manually resolve conflict files, sync to rev 172
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commit 4e9147888f674260dc18f27e0e835a466e6929a9
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat Apr 23 03:45:57 2011 +0000
accummulative update from hidden branch mmc/branch/havel from rev 142 to 172, major update to v0.8
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commit 33610492d3aec526c8fafce4507c36579eff7305
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Mar 30 21:57:06 2011 +0000
update ChangeLogs
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commit cb17175731adca6d3219c52785e590d785069481
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Mar 18 02:07:33 2011 +0000
fix a critical bug in sphdiffusionslab.m
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commit 46719a5819277a2746ef29c2a711d6c4d04fddee
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat Mar 12 04:26:30 2011 +0000
do not save partial pathlength by default, use -M H for SSE defau.t
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commit 5dda2770d4022b700d42f040203e3a226f810642
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Mar 1 04:11:51 2011 +0000
added help text for mesh file read/write functions
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commit bb94f7f9d660623ec696d86a2d7952273e90c124
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Feb 25 22:42:32 2011 +0000
use atomic for weight accumulation and double precision weight array
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commit f329cd643ff47af6401ff20fa66dbbddaaa4f2db
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Feb 22 21:38:10 2011 +0000
isspecular=2 to disable exit photon refraction
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commit cdeddd0967ee2a5dfc1c7484f9080d5bf2d00788
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Feb 20 23:42:33 2011 +0000
update meshing script to iso2mesh 1.0
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commit da7d69909506a638addf769612240f7ba0340eef
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Feb 20 21:10:27 2011 +0000
add --outputtype option
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commit 23861efe65fe14df3d53149b9166be567fa304f1
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Feb 18 20:21:15 2011 +0000
debug -E and -d options
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commit fb2ffb75839618ca1ccf225c32be50597e4d902e
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Feb 18 19:02:29 2011 +0000
remove debug info
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commit bbf5827b937a1f68371d97f4707ebe821797aa4b
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Feb 18 18:58:27 2011 +0000
support recording photon partial path lengths
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commit 5999b3db923124946263cadf0b324a6985416729
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Feb 18 03:21:21 2011 +0000
complete update for boundary reflection validation
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commit 8f830e8b311393186fde0db28212815a26aef005
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Feb 17 07:28:24 2011 +0000
support specular reflection, match results from other MC simulators
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commit bd4abf44307d0c52c9459e9a8c6e1c2f4c9c4ffc
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Feb 11 22:14:02 2011 +0000
set seed from command line, use static scheduling to enhance reproducibility
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commit 87fe7ba3c3f62944556128c6fad0b5b1f0ead0ab
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Feb 11 21:58:22 2011 +0000
support source types
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commit 254bd7d6fb1efd29227c1c91ab30e427a61e429f
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Feb 10 19:34:20 2011 +0000
use precomputed face normals in the reflection
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commit 1bff60f7d13e05e6895240d0bfd8dd7e1686c4c6
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Feb 9 21:54:03 2011 +0000
printing debug info
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commit ca72b5278ce49e3a9365087d9f560608299e6785
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Jan 12 21:08:58 2011 +0000
use char to specify ray-tracing method
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commit 8a36bfa9e5cfae7176e894330f5f0ce7c66f5498
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Jan 11 23:34:06 2011 +0000
add sse math support, gain about 10% speed-up
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commit 29d033f83e00738f48cc2eb64dea93ec5a922ca1
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Jan 11 06:00:32 2011 +0000
speed up Plucker with bary0 and add no-strict-aliasing flag
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commit 447e5940bac57f2cea29ca80fba291b66f5bf3c8
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon Jan 10 03:58:10 2011 +0000
bug fixed for havel bary centric values
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commit 9904103af4f9a813cd01398245e04732a1bd31ea
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Jan 9 05:43:18 2011 +0000
use initial barycentric coordinates for Havel ray-tracing
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commit f05c33bba9f9d33409eb44f34e3297dbdb022828
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jan 7 23:40:34 2011 +0000
further speed up by 15%
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commit 914abfc06e5fa0d58ae9db6655daedcfbb83328a
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jan 7 05:25:29 2011 +0000
add test unit for sse horizontal min
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commit df97d02085b082b278be20f79cf3c46c514ad9df
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jan 7 04:25:05 2011 +0000
simplify raytracer interface with ray and visitor structs
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commit 1c85f6e678a6382816fff472c3363d0314e8fbcf
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Jan 6 00:03:17 2011 +0000
branchless Horizontal Badouel
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commit 8e36cd7b776bcdce977661a7a1b7a63c4a1914b5
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Dec 26 15:19:33 2010 +0000
add horizontal Badouel with SSE, improves speed by 13%
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commit d69dd4b1ffa5bbc527523a2ae79ce8130b3a7e24
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Dec 21 22:47:38 2010 +0000
add support for Badouel's method
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commit 6ebd30527f730909093b4c87c279303959b955bb
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon Dec 20 22:24:21 2010 +0000
more updates to sync with mmc main repo
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commit 19379b7a88fee5997f1c3716e7377a04984777f9
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon Dec 20 22:07:08 2010 +0000
merge with mmc main svn rev 131
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commit 9be96b386073a036ec2114e46b5da93cdfe7dcf3
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Dec 2 19:37:21 2010 +0000
prefetch next tetrahedron precomputed data to speed up
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commit 7f61d2235553c004bf818b68f9b58ecfbf3f16a3
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Nov 30 22:50:45 2010 +0000
properly representing dt in the plotting scripts
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commit 233dc892774a9acf89109875616975ca7f28e8ba
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Nov 30 22:49:32 2010 +0000
code optimization and fixing time step in normalization
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commit 76fff3acbce7c09dbbb7ff1feb2c5eab65aeb85d
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat Nov 27 22:36:04 2010 +0000
use -fast flag for icc
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commit 7ab88bbe1febb40619703d255df323bd3511c215
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat Nov 27 22:18:50 2010 +0000
optimizing sse slightly
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commit 102bce5f8c127733c6b8f21f01624d79f663a543
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Nov 21 01:51:05 2010 +0000
update for smoother progress bar
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commit 0b53eba295e67c84ecd7ea9d0c8a738a8499d1e3
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Nov 18 21:31:33 2010 +0000
merge face norm test into havelsse4
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commit ba2051b1e2ef95b66c2de0443cd186a8761ecfa1
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Nov 17 22:53:51 2010 +0000
finally working, fixed _mm_rcp_ss by rcp_nr
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commit 9ae471883e27023569b2cb4ebeb437b614a45ce6
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Nov 17 04:39:56 2010 +0000
added Havel raytracing code
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commit 6c913c2841303700e3c920ee152e7d07d5c59751
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Nov 14 16:56:57 2010 +0000
new SSE4 addition
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commit 1fee6f8df130bfdc2223ccaedfae4d9d06920956
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Nov 14 16:55:53 2010 +0000
added mmc svn 110 snapshot
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commit 245c175a3e5cd1435b0f09ade32c7cf7aae8a79e
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Dec 17 22:29:52 2010 +0000
some typo fixes
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commit 27b08545e1289a35f62524492b211dbb60d5e2ef
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 15 19:33:34 2010 +0000
final polishing of the documents
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commit c3c6e52be7d432f4d25d92d21b5ef895bc11f868
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 15 00:43:10 2010 +0000
big red warning for using reflection code
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commit f57c0d564bf1d363978d52255d5ba7827968bfbd
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 15 00:28:57 2010 +0000
add more documentation
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commit 5da0fbaa6477359b8d16d8b677156d549cd02a29
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Dec 14 23:35:25 2010 +0000
update rngtest example, update ChangeLog
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commit 6307efd4828013d66ec5503b9e9b554a5442ccc4
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Dec 14 19:36:50 2010 +0000
compiled and debugged on windows with MinGW 20101030
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commit b67d51b225fc1ce9d8c94c053edc7e5a8517292b
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Dec 14 16:09:48 2010 +0000
add BSD license for SFMT units
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commit 27cce2a3b3724b451eb1f924c46073d64c0ca7b5
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Dec 14 16:07:43 2010 +0000
fix negative time difference
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commit a73c1b3e620f6b91480a905edbc4751dd9e7a5ed
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon Dec 13 15:10:45 2010 +0000
initial support for SFMT RNG, behavior is compiler dependent
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commit c6ee113cd5b1cfda34bef6f3888a4e7a064311a5
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon Dec 13 15:08:17 2010 +0000
use static inline for all RNG units
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commit bd5c2e218747739af87a50eaf12f5223b7f33925
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon Dec 13 15:06:58 2010 +0000
fix negative progress bar
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commit 72c054da8f4fe9d0fb3e98357d5f0b036e087a90
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Dec 7 03:19:49 2010 +0000
redundant line when merging codes
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commit e33c00a83d43e32b4f1f3717043a17b2c5965713
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Dec 5 04:23:23 2010 +0000
batch update of ChangeLog
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commit c49f6a95e4f368e158e89201f779385121aab003
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Dec 5 03:56:24 2010 +0000
initial doxygen support
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commit a5d35af6a9a0e640e2bd44ab8a1995e1f087c913
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Dec 5 00:19:04 2010 +0000
use make CC=compiler to support gcc, icc and llvm-gcc
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commit ae362bb5bab9a644b9acfe1c6b3470fbcb9554db
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat Dec 4 05:53:05 2010 +0000
support llvm-gcc with make target CC=llvm-gcc
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commit ee225031d48160261ee1cf0c06abd992e62683c2
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Dec 3 20:11:25 2010 +0000
support piece-wise-constant basis with -C 0
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commit 347f6167de3bcad0b4f1cf93f85f776cb4a544ae
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Dec 3 17:10:05 2010 +0000
speed up gcc binary by 2x with approximated expf and static inline
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commit 026a7feb1ece88fd402e53b5fa019d2e31ea049d
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Nov 30 22:35:11 2010 +0000
normalize by time gate width
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commit 9511578dc39c7c14447f8d5dcf7dc99ca78d07db
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Nov 19 20:40:23 2010 +0000
fix non-smooth progress bar
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commit e0bb3a72e7caf2fb16c10e830670002cb79f65b5
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Nov 18 15:42:11 2010 +0000
make icc to produce binaries with Intel C++ compiler
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commit 63557d802f8ea822110c68e5a277cb4abf636cb6
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Nov 12 15:28:40 2010 +0000
fix initial element id with iso2mesh 1.0.0pre
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commit 6207f234037321972f47b64b7ea3cf988177c823
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Aug 29 21:38:14 2010 +0000
ported for Windows using MinGW and Libgw32c
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commit bff0cb0178ec589b18dae71d903d23a6a8828840
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Aug 29 16:13:02 2010 +0000
update documentation for v0.2
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commit 380cc954e3a97bcde2d079412ff76443a30d2cd3
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Aug 29 04:42:53 2010 +0000
remove legacy MCX input format, update all input files and documents
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commit c1542cb3b2bb3ee238f439b55ffc6007d3e73e1c
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Aug 29 02:45:56 2010 +0000
update examples to use iso2mesh 1.0 and MCX 0.4.9 options
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commit fae35a9f839443732fa080c2e2104ebd3bdda738
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Aug 29 02:38:25 2010 +0000
support scientific notations for -n option
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commit aabb13d462d544b71f34ee87fbc3f6f8fa44ac50
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Aug 29 02:34:29 2010 +0000
separate session id with mesh id
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commit e31b310ad2925f30ec0ea319153a1b79cfd90ffc
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Jul 25 17:33:13 2010 +0000
add help text for all functions
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commit 6b4638e0b1bc3f3cf6edd81a8504b9488ae64e88
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jul 16 18:23:07 2010 +0000
workaround for tty col-width in windows
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commit 89b48276b95e309d67b0ea07493403d7f1926c42
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jul 16 15:46:00 2010 +0000
explain input file format in README
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commit ac3b312bb9338cbb22ab479f1aad9db53862f6a9
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jul 16 14:58:38 2010 +0000
add README file for examples
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commit 3d2ac87a346de0d17c7ec27a08261cb99b6320cf
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jul 16 05:36:42 2010 +0000
script to run mcx for the validation case
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commit 182f4efdcecf8a26e2cc0c048fb9018135d0e547
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jul 16 05:27:52 2010 +0000
update reference, polish README
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commit a9a13d28184ad498613c780de98fe0afaa9fcbb2
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Jul 15 05:30:30 2010 +0000
use -u to set mesh length unit
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commit abce2717b17e4645e4d6e017ad2cd742af119cde
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Jul 15 04:24:25 2010 +0000
officially update license to GPLv3, MMC is now open-source
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commit 390e0193913dde37a4233839cfbebdad21672fd4
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Jul 8 23:46:49 2010 +0000
set default debug flag to T and P
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commit d43b0f436a2eaf898d335383e7473790c0c518a6
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Jul 7 05:35:42 2010 +0000
paper accepted, update ChangeLog
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commit 8bc7a1735d7b9a8e63cfb5c6d5dc40725e4f963d
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Jul 7 05:21:27 2010 +0000
add speed benchmark script
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commit 443e13472d571da6bcb9d48c47eeeadd2dbe4bae
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Jun 24 19:39:14 2010 +0000
accumulative update to ChangeLog
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commit 5a57b1a053a9f82a130a951b4ae54295dcd57bfe
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Jun 24 03:32:09 2010 +0000
use literal debug options
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commit efcec4543e6d2a9410896a62b26318c694803ae2
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Jun 24 03:30:47 2010 +0000
progress bar with -D P option
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commit ae0510f5c8edf0992c759e55baa3f59c0c869981
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Jun 23 23:18:20 2010 +0000
use meaning string as debugging flags
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commit 9f938b3a6d479189f77d052591fccec65325f1db
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Jun 23 05:22:39 2010 +0000
make it possible to model transparent medium
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commit 8398aa0d50b23d7b8869e5a362d42b5910a3cfec
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Jun 23 05:11:03 2010 +0000
debugged external boundary reflection scheme, fix reflection bug
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commit 15ee2d416bcba591918bb5ba8747992596e85a87
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon Jun 21 04:41:53 2010 +0000
Russian Roulette to terminate photon
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commit aba98e5e5f89fb0fa6b90c8b96d835f637420856
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon Jun 21 03:26:01 2010 +0000
add boundary reflection for internal or external surfaces
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commit 2a49092e9faecdd4cfb97de2bb3cbaaa1a4d7312
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Jun 9 17:15:29 2010 +0000
only install gcc to compile
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commit 4fda05e020ce99fb6b421694a258d7f4597b059b
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Jun 9 17:08:09 2010 +0000
start photon id from 0
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commit 119f5f08b5c7b7b36763b035e81649eafb501889
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Jun 9 16:27:16 2010 +0000
update README files for the examples
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commit 687c1e84b74b000e1fab9ca4a31e500e86c9e236
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Jun 8 19:02:49 2010 +0000
add README file for onecube example
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commit c34059de7c1ce7adf315fd6495c79337f8151328
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Jun 8 18:52:32 2010 +0000
minor updates after regression tests
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commit a7f96c9ea370df5da15f1de9767a8ac6c1ad1f88
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Jun 8 18:51:28 2010 +0000
update print messages
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commit 58521ff15ba72cc969802be6e4f19202baa0b8cb
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Jun 8 18:48:32 2010 +0000
make example matlab/octave consistent
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commit 57c38806a0bccbb5cd97bd65c86fa5d95a166602
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue Jun 8 16:39:52 2010 +0000
list debuglevel help info
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commit 50c87b7ad149f1f35fb49bd69a43fa5bb73603ac
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Jun 6 00:35:21 2010 +0000
reorient mesh before saving
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commit 244341372fc8b1e65019f8e5a90fae732df05ef8
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat Jun 5 21:45:57 2010 +0000
update logistic makefile to use the timing unit
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commit 1def9174c4f7eb89a7cb38b7cdcccf68d71359c8
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat Jun 5 03:43:23 2010 +0000
minor polishing for paper writing
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commit e201922989376ef97063a9435e1e07cb2901f571
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat Jun 5 03:42:20 2010 +0000
added timing unit from mcxcl project, added MMCDEBUG macro
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@73 4848f366-3658-0410-a320-90152d9d5b07
commit c1b81f55b439f9f221cdf1166b1c54ba20948173
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun May 30 16:58:14 2010 +0000
make it compatible with GNU Octave
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@72 4848f366-3658-0410-a320-90152d9d5b07
commit 1595b84d93800fc51259d7f15f29b4f9a8d3f2c4
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun May 30 15:25:24 2010 +0000
tested on windows, unify default cfg settings
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commit 6927675f8176e37eba5059aef106ff3f719668de
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 27 04:45:53 2010 +0000
fine tuning the final plots, all good
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@70 4848f366-3658-0410-a320-90152d9d5b07
commit 2e9106bdbad17b121fc266c293912e8cd06826ef
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 27 03:11:12 2010 +0000
I thought I had fixed this, now it works perfectly
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@69 4848f366-3658-0410-a320-90152d9d5b07
commit 967f01ece374e06307ee7d4acf8e74124fb9f34b
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed May 26 02:42:50 2010 +0000
add analytical solutions for infinite slab with a sphere
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commit 2c950f713cdc61fa04580b8a13b43862e6e3bc0f
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 25 21:16:17 2010 +0000
complete the analytical solution for sphere in semi-infinite space
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@67 4848f366-3658-0410-a320-90152d9d5b07
commit aef92af680c747ddc269f52b774e679a113e36ab
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon May 24 18:05:45 2010 +0000
longer space for Rev keyword
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commit f2b88e23d130677b9f06365c6f2850fee8cb8d4e
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon May 24 18:04:43 2010 +0000
accumulative changes
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@65 4848f366-3658-0410-a320-90152d9d5b07
commit c99f31c476099ce18819697989058a36432d0818
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun May 23 05:38:14 2010 +0000
updates to examples
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commit e5f366680d6ae23dd5ba940febdeb8f75a4ae4c0
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun May 23 05:22:41 2010 +0000
retake finish-this-element-before-leave policy
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@63 4848f366-3658-0410-a320-90152d9d5b07
commit 46dae79f1540b0a500fae6133c4e18e20359ec53
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun May 23 01:40:00 2010 +0000
reduce roundoff-error by explicit counting energy loss
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@62 4848f366-3658-0410-a320-90152d9d5b07
commit 7a58a6b34f2c3e04698a5f11cc4385d923fbdc10
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri May 21 03:57:43 2010 +0000
add README document
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@61 4848f366-3658-0410-a320-90152d9d5b07
commit 64a7c5f994007c71a742705798343d9748ec8cb6
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 20 22:50:09 2010 +0000
remove gcc warnings
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@60 4848f366-3658-0410-a320-90152d9d5b07
commit 999ded81825645d3d3ba1aec7ab32edd0ba4e9a5
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 20 22:06:45 2010 +0000
add external bary centric test
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@59 4848f366-3658-0410-a320-90152d9d5b07
commit 5359e8f442d34773d046ff1c0f602a39e7c65b9a
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 20 22:03:19 2010 +0000
add test script for onecube validation
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@58 4848f366-3658-0410-a320-90152d9d5b07
commit 535e310155bb4c3594593dcce00b7ff836d6dba9
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 20 21:04:11 2010 +0000
consider Lremain in the accumulation path
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@57 4848f366-3658-0410-a320-90152d9d5b07
commit f0078599eafb650e76b16ad08c3f5705cc4c26cd
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 20 21:03:38 2010 +0000
add functions to compute the analytical solution of a sphere inside infinite medium
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@56 4848f366-3658-0410-a320-90152d9d5b07
commit 0678b3814daee5b005326a8a563f0bb640cd1143
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed May 19 15:54:59 2010 +0000
use elem-volume, update tests, twig parameters
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@55 4848f366-3658-0410-a320-90152d9d5b07
commit 43c63cc836735b56e4e98e8619af72ba4b89478d
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed May 19 15:49:09 2010 +0000
use MCX approach for fluence accumulation, debugged normalization, tested with benchmarks
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@54 4848f366-3658-0410-a320-90152d9d5b07
commit a83414e1a33db761653c89560ba0be42810d5b43
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 13 16:31:08 2010 +0000
run all tests with 300 million photons
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@53 4848f366-3658-0410-a320-90152d9d5b07
commit 5ac47540c5b09fba26e40d864f1c47bfd4f6e541
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 13 05:38:49 2010 +0000
use multi-threaded 48bit POSIX RNG
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@52 4848f366-3658-0410-a320-90152d9d5b07
commit 4f3869f7396e2ff39eb28fc73f4332b153d5dd38
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 11 23:56:08 2010 +0000
onetetra folder is no use, remove
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@51 4848f366-3658-0410-a320-90152d9d5b07
commit a136835685f50fe324862680ea4a8f4fd647850d
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 11 21:39:50 2010 +0000
valgrind is my friend
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@50 4848f366-3658-0410-a320-90152d9d5b07
commit 16aceff18810d24a07e08144684f83836e5f37ef
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 11 19:11:54 2010 +0000
reformat debug info
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@49 4848f366-3658-0410-a320-90152d9d5b07
commit dffc444c175561d54d1cfdb481830b085c95eef0
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 11 17:51:48 2010 +0000
add debug example
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commit 7218e006dd9ef2205f76957c624f0e182cca8350
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 11 17:42:38 2010 +0000
restore MMC approach of ray-tracing
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commit 52019519e5f41c09fad92857089c8cfb2b0a3925
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 11 17:39:45 2010 +0000
use MCX way for accumulation, virtually the same result, will retro
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@46 4848f366-3658-0410-a320-90152d9d5b07
commit 2365626d6ddde254e0236530fef4f3c53115e251
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 11 16:47:19 2010 +0000
use constant memory for mapping data
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@45 4848f366-3658-0410-a320-90152d9d5b07
commit 47462989d3c9c3a85af2ad4de837dc524521a37c
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 11 05:54:35 2010 +0000
associate atte to mesh rather than cfg
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@44 4848f366-3658-0410-a320-90152d9d5b07
commit 9ae2f9ab633dcee29baa23e5e28403523efe43a0
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 11 05:35:52 2010 +0000
use minstep to accumulate
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@43 4848f366-3658-0410-a320-90152d9d5b07
commit 4ca64f4e9fa62794837ab9602f1077e9488c7694
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon May 10 22:08:16 2010 +0000
print packet energy info
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commit 43277ddf57adb76d48c796b7c274161ea51a5731
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon May 10 21:44:09 2010 +0000
add test cases for the two RNG options
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@41 4848f366-3658-0410-a320-90152d9d5b07
commit e38a7d2501a1b3829f6e50632363298d0776ab0e
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon May 10 21:43:11 2010 +0000
add options for log and posix rngs
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@40 4848f366-3658-0410-a320-90152d9d5b07
commit 74dffdd4f0da7d2c0f89c2347da0b6131c0a6bb6
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Mon May 10 21:42:52 2010 +0000
change default RNG to POSIX MT RNG, use MCX standard interface,add and debugged logistic RNG
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@39 4848f366-3658-0410-a320-90152d9d5b07
commit 9505ee725c1a4da10fb0a62e6dbc76305456e1f8
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun May 9 03:47:05 2010 +0000
fine tune mesh generation and run final test cases
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@38 4848f366-3658-0410-a320-90152d9d5b07
commit 2deaefbd2d348e0aeeb5f4d28d1c26a80e29b7bd
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat May 8 21:39:37 2010 +0000
disable -m, enable -n
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commit 527e4c4a4f5a64cef036e157add53e9f9806f58c
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat May 8 21:08:10 2010 +0000
debugged edge hitter handling
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@36 4848f366-3658-0410-a320-90152d9d5b07
commit ac89b93c0358408bad64ea4314277c948d5391d7
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat May 8 16:29:25 2010 +0000
debug edge hitters
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@35 4848f366-3658-0410-a320-90152d9d5b07
commit a79f6d50ab6267c2f648f95bba473db17d4893ce
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri May 7 23:11:40 2010 +0000
ready for the final run
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@34 4848f366-3658-0410-a320-90152d9d5b07
commit a700d620348a5d6d5aefff96d2c01415de23e627
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri May 7 22:55:00 2010 +0000
add MCX validation script and input files
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commit 273a0e8897a96a06ce97960d77131fb7534bc091
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri May 7 05:20:58 2010 +0000
sort mesh to increase consistency and reduce cache miss
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commit 7512092098ccbc69b390df75db343e95a0aa76b3
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 6 19:42:14 2010 +0000
wrap core simulation into a function
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commit abb69a9e6953b350cc7ee4b50a74d073499da1a5
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 6 18:32:34 2010 +0000
correct mesh node order and source positions
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@30 4848f366-3658-0410-a320-90152d9d5b07
commit 671e9162587b40343a0cc200ecb4cf06dcb532d5
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 6 18:31:41 2010 +0000
absorb nodevolume and elemvolume to iso2mesh
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@29 4848f366-3658-0410-a320-90152d9d5b07
commit 56c6e3c02377ccee89f422c1e693fd6c560059fe
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu May 6 18:31:15 2010 +0000
new debug symbol
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@28 4848f366-3658-0410-a320-90152d9d5b07
commit e80c6ce72789e2191a68dccf5db66dc8276d001a
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed May 5 18:17:03 2010 +0000
debugged mesh generation for the samples
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@27 4848f366-3658-0410-a320-90152d9d5b07
commit 32ac604ca2fdfb377102e21c900ae4668ca17a6f
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed May 5 05:53:04 2010 +0000
remove output file
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@26 4848f366-3658-0410-a320-90152d9d5b07
commit a18d85ac155e35dce1b0a2b65e699b5d060e25f4
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed May 5 05:52:16 2010 +0000
add validation and mesh test cases
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@25 4848f366-3658-0410-a320-90152d9d5b07
commit 58c069b17769e1b84cb05f4bc46a96414d63fa73
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Tue May 4 17:39:47 2010 +0000
ensure all tetrahedra have positive volumes
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@24 4848f366-3658-0410-a320-90152d9d5b07
commit d619b01049fcaf0993b004aced884ce86afdfe3c
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun May 2 15:57:33 2010 +0000
add T5 and T6 meshing functions
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@23 4848f366-3658-0410-a320-90152d9d5b07
commit c10d1d10101f3ef985ca1e69939a007108cc7610
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sat May 1 18:48:42 2010 +0000
fluence normalization and SSE4 support
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@22 4848f366-3658-0410-a320-90152d9d5b07
commit 24a92c57ccad96dd6692fc62283f7776ebd059c6
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Apr 22 04:34:03 2010 +0000
add ChangeLog
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@21 4848f366-3658-0410-a320-90152d9d5b07
commit 34cf82819f546b0efbdccefb2501854b62b0cac5
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Apr 22 04:14:24 2010 +0000
time-resolved simulations
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@20 4848f366-3658-0410-a320-90152d9d5b07
commit 25628a30288770b1bc807290304faeb8891576cd
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Apr 21 21:20:12 2010 +0000
load mesh node volume to normalize solutions
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@19 4848f366-3658-0410-a320-90152d9d5b07
commit d7d9cfad7d6fabb8788fe038d156d69968274840
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Apr 21 21:18:16 2010 +0000
use node volume for normalization
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@18 4848f366-3658-0410-a320-90152d9d5b07
commit 9a732a909be270c6718f84a7bf784b3a5a93abe6
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Apr 21 18:54:32 2010 +0000
lots of fixes for scattering and ray tracing
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@17 4848f366-3658-0410-a320-90152d9d5b07
commit af0c85c61084818f1243fb00a4614602b776c7ee
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Sun Apr 18 23:40:03 2010 +0000
use diff energy to record
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@16 4848f366-3658-0410-a320-90152d9d5b07
commit 2ca5504bd38c2526f2bf115ab13fee478ddb4a69
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jan 1 23:06:28 2010 +0000
prof target,debuglevel,add weight middle pt at pin and pout
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@15 4848f366-3658-0410-a320-90152d9d5b07
commit af98345ae49fec31f37d06a82c1cc14401fdcec3
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jan 1 19:07:39 2010 +0000
ignore the edge-passing rays
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commit 95900d0279f0b03f58d78017f62c2353424131e1
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jan 1 01:52:55 2010 +0000
return nextlen from mc_next_scatter
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@13 4848f366-3658-0410-a320-90152d9d5b07
commit e4f2d1d0293664cb19f982cafb7f419a85462acc
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jan 1 01:25:27 2010 +0000
fix scattering bug
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@12 4848f366-3658-0410-a320-90152d9d5b07
commit 5898d2b50f9cb01146287c7258fd48e782d2e0d8
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Fri Jan 1 00:47:18 2010 +0000
debug sphbox case
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@11 4848f366-3658-0410-a320-90152d9d5b07
commit ddcdb124f8b73799b2655b3707911da6ed72bc45
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Thu Dec 31 07:22:42 2009 +0000
test with sphere-box case
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@10 4848f366-3658-0410-a320-90152d9d5b07
commit 45ae09bc4ff4d683053be8cc2aa47351b002fed1
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 30 22:51:40 2009 +0000
add some simple documents
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commit 83d3690c67320f0f9c53d0e04695e799622df7aa
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 30 22:38:33 2009 +0000
run under -O0 flag
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@8 4848f366-3658-0410-a320-90152d9d5b07
commit 8273d53bfdaf2bfaa64855bff591ee86f25fdfd4
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 30 20:01:31 2009 +0000
add mcx_utils, use common Makefile
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commit 65be7fef1819f9ce437755518e7c95300f8b10e7
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 30 19:38:40 2009 +0000
add mcx_utils to interpret command line options
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@6 4848f366-3658-0410-a320-90152d9d5b07
commit 3105d31893e754b0c7627b14b001743ab839c274
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 30 18:37:52 2009 +0000
debug weight
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@5 4848f366-3658-0410-a320-90152d9d5b07
commit 7a8a2e3ccb1aca4fc09308521186003d2a5dc34b
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 30 17:07:23 2009 +0000
add weights, not fully working
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@4 4848f366-3658-0410-a320-90152d9d5b07
commit 27880defd30aa5b7ca35179cbfaaa7345518caf1
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 30 02:28:09 2009 +0000
add scattering to ray tracing
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@3 4848f366-3658-0410-a320-90152d9d5b07
commit 1ca377ab79f51b7390ff4d03749cc7f199f34b20
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 30 02:27:43 2009 +0000
add scattering to ray tracing
git-svn-id: file:///autofs/homes/012/fangq/space/git/Temp/mmc_svn@2 4848f366-3658-0410-a320-90152d9d5b07
commit 87d7ec6a292f4f38fb58e8fe0f954e28295f83a1
Author: fangq <fangq@4848f366-3658-0410-a320-90152d9d5b07>
Date: Wed Dec 30 02:23:54 2009 +0000
initial import of mmc
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